LIFE ON THIS EARTH, IS THE STRENGEST THING YOU WILL EVER DO.

“Maybe part of the definition of life, ‘Irreducible complexity/'”

There are many bad counterarguments to Michael Behe’s famous irreducible complexity conundrum and () one pretty good one.
For those unfamiliar with Behe’s argument, it goes like this: Darwinian evolution is supposed to build complex systems gradually, overcoming vast improbabilities in tiny steps over billions of years. But, strangely, numerous systems in living organisms are “irreducibly complex”—they contain a core set of key elements that are all absolutely necessary for the system to function at all. Gradual evolution through random variation and natural selection could never build such a system because the system would have no adaptive function until it was already completely finished.

After Behe made this case in his 1996 book Darwin’s Black Box, scientists (and non-scientists) scrambled to rebut him. Some argued that the systems in question were not irreducibly complex; others argued that they could have arisen through cooption of parts from other systems; others argued that they emerged as reductions from larger complex systems that were not irreducibly complex… and so on.
None of those arguments have held up to logical or empirical scrutiny. But I do not think those arguments are the real reason that most who find Behe’s argument unpersuasive find it unpersuasive. I suspect that the real objection to most people is something more gut-level and foundational, which might be expressed something like this:

Okay, so maybe it’s hard to see how gradual, blind processes could produce a few special systems like the bacterial flagella. Because of irreducible complexity — got it. But Darwin’s theory still makes sense for everything else. So are we going to throw out the whole theory based on a few things we cannot explain? Is it not more likely that there has some explanation for these things, and we just have to?

After all, if Darwinian evolution works in theory, then it seems to follow that Darwinian evolution should have happened. And then, if living organisms do not look like they were made by Darwinian evolution, the question just becomes, “So where the heck are the things that were made by Darwinian evolution?” Even if the presence of irreducible complexity shows that all the organisms we study did not arise from Darwinian evolution, it does not explain why they did not arise from Darwinian evolution.

For the irreducible complexity argument to persuade someone away from Darwinism, it is not enough to show that some structures in living organisms do not look like they were made from unguided Darwinian processes. As long as unguided Darwinian processes work in theory, the existence of irreducible complexity in life may add confusion and mystery, but it does not do away with the theory. For the argument to be convincing, you also need to show that Darwinism does not work to construct living organisms, even in theory.
Might this be the case? This would be the case if irreducible complexity was necessary for living systems. If something needs to be irreducibly complex to achieve the characteristics that would make us call it “alive,” then Darwin’s theory does not even work in theory, and the mystery is solved—we see features that Darwinian evolution cannot explain simply because Darwinian evolution did not happen and cannot occur.
Behe argued something like this in response to the criticisms of his first book. But it was initially an open question—there is no quick-and-easy way to tell whether irreducible complexity is intrinsic and necessary to life.
It is extremely interesting that the prominent theoretical biologist Stuart Kauffman has been promoting a definition of life that entails irreducible complexity.

A Definition of Life Living organisms, apart from non-living things, and what makes them able to function and evolve is that in living organisms, the parts exist for and through the whole. Kauffman calls such systems “Kantian wholes” (because the idea comes from Immanuel Kant’s Critique of Judgement). To put it another way, a Kantian whole is a self-creating system in which everything supports and depends upon everything else.

It’s easy to see how living organisms fit this definition. Your various parts cannot exist without you—you will never find a brain or a spleen lying on its own (at least not for very long). Likewise, you would not exist if you did not have those parts (at least, not for very long).
It is also easy to see that such a system is, by definition, irreducible and complex. The “whole”—by definition—encompasses all the parts. So, suppose the whole is necessary for the continued existence of the parts. In that case, all the parts are required for the continued existence of the parts—which is the definition of irreducible complexity. Not all irreducibly complex systems are necessarily Kantian wholes, but Kantian wholes are necessarily irreducibly complex.
Of course, someone will probably indicate that this is all very interesting philosophizing, but science is about empirical evidence. And Kauffman, as a scientist, is eager to provide it. He co-authored a paper published in Proceedings of the Royal Society B, which showed that life has existed as Kantian holes as far back in evolutionary history as we can see.
Xavier et al. took a database of metabolic reactions in bacteria and archaea (the two domains of the simplest lifeforms) and looked at their common reactions. They found in the intersection of bacteria and archaea a collectively autocatalytic set of 172 reactions. (“Collectively autocatalytic” means that the set of reactions is self-creating — all the catalysts of the reactions in the set are created by other reactions in the same set; e.g., A creates B, B creates C, C creates A.) From a phylogenetic perspective, this implies that the common ancestor of bacteria and archaea — and thus presumably the “last universal common ancestor” (LUCA) itself — was characterized by complex autocatalytic metabolic cycles. In a paper in the volume Evolution “On Purpose”: Teleonomy in Living Systems, Kauffman and his colleague Andrea Roli write that these findings “very strongly suggest that life arose as small-molecule collectively autocatalytic sets.”
Kauffman and his co-theorists believe that collectively, autocatalytic sets are Kantian wholes. Therefore, they argue that Kantian wholeness has characterized life from the beginning, under Kauffman’s contention that living things are Kantian wholes. If that’s true, then—as we have seen—life is irreducibly complex.

If irreducible complexity is part of the definition of life, this solves the problem raised in the response to Behe’s irreducible complexity argument.

It all comes down to what we are trying to explain. When we invoke evolution or design. Why does life need an explanation at all? What makes people, cows, mushrooms, pine trees, bacteria, and so forth perplexing to us?
Darwin seemed to think the problem was mere complexity or the adaptedness of organisms to their environment. That seems plausible at first glance, but in retrospect, we should have known that it is not the case. A pile of sand is complex—the odds of obtaining that same arrangement of grains of sand a second time are almost nil—but nobody thinks that the existence of piles of sand is a big mystery.
No, the thing that makes living organisms so mysterious (one thing that makes them mysterious nonetheless) is that they are irreducibly complex: they move, act, reproduce, and grow by an elaborate system of interconnected, interworking parts. It’s obvious (with 20-20 hindsight) that this is the real mystery in need of explanation, and it is equally evident that the ability of natural selection to pile up tiny, individually useful random variations in no way explains (or even attempts to explain) how such an intricate network could come to be.
So when Behe pointed to irreducible complexity, he wasn’t noticing some random, inexplicable feature of specific biological systems and using it to attack Darwin’s theory. Instead, he was focusing on what exactly it is about life that makes us feel it needs explaining. And that turned out to be something about which Darwin’s insights, brilliant though they were, had nothing to say.

For example, this line of thinking has got to be why evolutionary biologist Bret Weinstein feels that “if we pursue that question [a particular problem raised by ID proponents], what we are going to find is, oh, there has a layer of Darwinism we did not get and it has going to turn out that the intelligent design folks are going to be wrong”—even td a deep admiration for… tired… tired… tired…t that ID proponents are pointing to genuine holes in the current theory of evolution.